AI Copilot - BioMiner Indexd

Meet Your AI Assistant

BioMiner Copilot is an AI-powered assistant that helps you navigate and understand complex omics datasets. Ask questions in natural language and get intelligent insights about your data.

Natural language queries

Intelligent dataset recommendations

Real-time data analysis

Advanced search capabilities

AI Copilot

What datasets contain RNA-seq data for breast cancer?

I found several datasets with RNA-seq data for breast cancer. The most relevant ones include:

• acbc_mskcc_2015 - Adenoid Cystic Carcinoma of the Breast (12 samples)
• brca_tcga - Breast Cancer TCGA dataset (1,100+ samples)

Would you like me to show you more details about any of these datasets?

Key Capabilities

What you can do with AI Copilot

Dataset Discovery

Find relevant datasets by asking questions about disease types, sample sizes, data types, and more.

"Show me datasets with mutation data for lung cancer"

Data Analysis

Get insights about data distributions, correlations, and statistical summaries across datasets.

"What's the age distribution in the breast cancer dataset?"

Download Guidance

Get step-by-step instructions for downloading and accessing specific datasets and files.

"How do I download the mutation data from acbc_mskcc_2015?"

Code Generation

Generate code snippets for data loading, analysis, and visualization using popular bioinformatics tools.

"Generate R code to load the clinical data"

File Management

Upload and manage your own data files with intelligent metadata extraction and organization.

"Upload my RNA-seq data and create a new dataset"

Conversation History

Maintain conversation context and access previous queries for seamless workflow continuity.

"Show me my previous analysis of the breast cancer data"

How to Use Copilot

Simple steps to get started with AI-powered data exploration

1

Access Copilot

Navigate to the Copilot interface in the BioMiner web application

2

Ask Questions

Type your questions in natural language about datasets, data types, or analysis needs

3

Get Insights

Receive intelligent responses with relevant datasets, analysis suggestions, and code examples

4

Take Action

Download data, run analyses, or explore further based on Copilot's recommendations

Example Conversations

See how Copilot can help with real research questions

Dataset Discovery

You: I need RNA-seq data for triple-negative breast cancer studies

Copilot: I found several relevant datasets:
• fuscc_tnbc_465 - Chinese TNBC cohort (465 samples)
• brca_tcga_tnbc - TCGA TNBC subset (150+ samples)

Both include RNA-seq, mutation, and clinical data. Would you like details on either?

Data Analysis

You: What's the survival rate correlation with TP53 mutations in breast cancer?

Copilot: I can help analyze this! Let me:
1. Load the breast cancer datasets
2. Filter for TP53 mutation data
3. Correlate with survival outcomes

Here's the R code to get started...

Data Access

You: How do I download the clinical data from acbc_mskcc_2015?

Copilot: Here's how to access the clinical data:
1. Go to the dataset page
2. Click "Download Clinical Data"
3. Choose your preferred format (TSV/CSV)

Direct link: View Dataset

Code Generation

You: Generate Python code to load and visualize the mutation data

Copilot: Here's Python code to load and visualize the data:

import pandas as pd
import matplotlib.pyplot as plt

# Load mutation data
mutations = pd.read_csv('mutations.tsv', sep='\t')
# Create visualization...

Seamless Integration

Copilot integrates seamlessly with the BioMiner ecosystem, providing direct access to datasets, analysis tools, and download capabilities.

Direct dataset access

Interactive data tables

One-click downloads

Built-in visualizations

Ready to Try Copilot?

Start exploring your omics data with AI-powered assistance. Get instant insights and accelerate your research workflow.

Launch Copilot Browse Datasets